{ "version": "actual-mask-export-1.2", "snapshot_utc": "2026-10-24T08:57:26Z", "selection_manifest": "cache/renal_public_benchmark_20261024/selected_cases.json", "methods": { "measurement": "Unchanged binary masks on their existing common arterial-ROI grid; no resampling or voxel repair.", "connectivity": "6-neighbour connected components, including every small component.", "parent_connection": "Raw source volumes are retained. For renal-branch connectivity only, both common TS parent trunks (aorta union IVC) are excluded from every system mask. Remaining vessel components 6-neighbour touching the respective common aorta/IVC are rooted; fraction is rooted branch voxels / all branch voxels. No inserted bridges. Branch metrics are NA unless both common parent masks exist.", "kidney_reach": "Number of common TotalSegmentator whole-kidney masks within <=3 mm Euclidean physical distance of rooted vessel voxels; an engineering proximity measure, not hilar entrances or vessel patency.", "bone_proxy": "Overlap with the common TotalSegmentator vertebrae/ribs/sacrum/hips/sternum prediction; an algorithmic proxy, not ground truth; also used by V8 and therefore not independent validation.", "agreement": "MONAI-V8 vessel-union Dice is inter-system agreement, not accuracy. Both raw-source and common-parent-excluded branch Dice are supplied. Whole kidney and renal parenchyma are different targets; no kidney Dice is calculated.", "surface": "FlyingEdges at 0.5 on the binary mask; full NIfTI affine to RAS millimetres; identical WindowedSinc smoothing with per-vertex displacement capped at 0.2 mm, no decimation/component removal/hole filling. Metrics precede smoothing.", "camera": "Shared CT-ROI physical bounds, orthographic projection; front camera at RAS +Y, back at -Y, superior +Z. Identical scale, colours, opacity, lights and surface processing for all systems within a case.", "timing": "No cross-system runtime table: TS parent-stage timing, MONAI inference and V8 postprocessing measure different scopes.", "monai": "Same public weights; first unshifted FP32 pass, sliding window overlap 0.5 and Gaussian blending. Displayed masks are independent sigmoid channels thresholded at 0.5 and may overlap. monai/merged_labels.nii.gz is separately retained as a mutually exclusive, lower-label-priority merge. Official bundle default overlap is 0.25. No TS parent vessels added to MONAI display; this adapted baseline is not a complete official workflow replication.", "v8": "Generic rule transfer using three translated-inference averages and general postprocessing. No new supervised training, no case-specific manual edits, and not equivalent to all previously edited private-case deliveries.", "urinary": "Only a confirmed descriptor E case receives a separate native-E candidate display. D is not treated as E; native-E masks are not silently fused/resampled into the A grid.", "clinical_boundary": "No manual reference standard, independence audit or clinical accuracy validation. Five cases are descriptive only; no sensitivity, accuracy, superiority claims, or significance testing.", "training_overlap": "Overlap of these public patients with any contributing model's training/validation data has not been excluded; this is not called independent external validation.", "phase_scope": "Five contrast-enhanced abdominal CT patients: only PUB-004 has explicit A/V/E; four have A/V/D delayed-phase extension inputs. They are not five CTU or five native E-domain validation cases. preprocessing_report.triphase_model_eligible only means registration quality passed, not that D satisfies the network's native E requirement. methods.json describes the actual run; protocol_review.md is a pre-run archive.", "totalsegmentator_scope": "The executed comparison is TotalSegmentator 2.14.0 total-family organ/parent-vessel tasks 291/293/297, without renal artery or renal vein branch labels. The newer official renal_arteries task 710 is present at commit c59be95b839252dd993e1e32ff3369168d9f4eab, requires a valid license, and has not been run or added to these frozen image columns. No dedicated renal-vein task was identified in the audited official task/class maps at that commit; this is a bounded source audit, not a claim that every official model lacks renal arteries." }, "official_task_support": { "source_commit": "c59be95b839252dd993e1e32ff3369168d9f4eab", "executed_baseline": { "version": "2.14.0", "tasks": [ 291, 293, 297 ], "completed_patients": 5, "renal_artery_branches_supplied": false, "renal_vein_branches_supplied": false }, "official_renal_arteries": { "task": "renal_arteries", "task_id": 710, "software_version": "2.18.0", "officially_supported": true, "license_required": true, "classes": [ "celiac_trunk", "superior_mesenteric_artery", "renal_arteries" ], "model_resample_mm": 1.5, "renal_artery_label": 3, "inference_performed": false, "completed_cases": 0, "expected_cases": 5, "license_present": false, "license_verified_online": false, "weights_downloaded": false, "included_in_existing_comparison_columns": false, "interface_status": "ready_pending_license", "interface_status_file": "totalsegmentator_official_status.json", "isolated_environment": { "isolated_import": true, "torch": "2.7.1+cu126", "cuda_available": true, "nnunetv2": "2.8.1", "production_modified": false }, "input_scope": "Same existing arterial kidney-ROI CT as the other systems, no new registration or resampling in this adapter. Official aorta_report instead crops aorta+heart with a 20 mm margin and resamples to 0.8 mm before calling this 1.5 mm task. This is a kidney-ROI adaptation, not a full aorta_report reproduction.", "output_scope": "Only label 3 is renal arteries. Celiac trunk (1) and SMA (2) remain separate. No renal-vein, left/right, accessory-artery or segmental-territory label is provided. Label support does not establish distal-branch accuracy.", "academic_license_url": "https://backend.totalsegmentator.com/license-academic/" }, "dedicated_renal_vein_task": { "identified_in_audited_official_maps": false, "scope": "Fixed-commit task and class maps only; not a statement about all possible/future official models." }, "official_sources": { "class_and_license_map": "https://github.com/wasserth/TotalSegmentator/blob/c59be95b839252dd993e1e32ff3369168d9f4eab/totalsegmentator/map_to_binary.py#L670", "task_configuration": "https://github.com/wasserth/TotalSegmentator/blob/c59be95b839252dd993e1e32ff3369168d9f4eab/totalsegmentator/map_tasks_config.py#L485", "license_check": "https://github.com/wasserth/TotalSegmentator/blob/c59be95b839252dd993e1e32ff3369168d9f4eab/totalsegmentator/python_api.py#L135", "task_registry": "https://github.com/wasserth/TotalSegmentator/blob/c59be95b839252dd993e1e32ff3369168d9f4eab/totalsegmentator/registry.py" } }, "cases": [ { "public_id": "PUB-001", 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{ "status": "measured", "voxel_count": 42318, "volume_ml": 52.303436279296875, "connected_components_6": 541, "largest_component_fraction": 0.3787277281535044, "branch_voxel_count": 27063, "branch_volume_ml": 33.44883728027344, "branch_connected_components_6": 541, "branch_analysis_scope": "source mask minus common TS aorta union IVC", "rooted_volume_ml": 1.15191650390625, "root_connected_fraction": 0.034438162805306136, "rooted_kidney_neighbourhood_sides": 0, "bone_proxy_overlap_ml": 24.968902587890625, "bone_proxy_fraction": 0.4773855097121792 }, "vein": { "status": "measured", "voxel_count": 34182, "volume_ml": 42.247650146484375, "connected_components_6": 316, "largest_component_fraction": 0.5035983851149728, "branch_voxel_count": 16866, "branch_volume_ml": 20.845733642578125, "branch_connected_components_6": 307, "branch_analysis_scope": "source mask minus common TS aorta union IVC", "rooted_volume_ml": 2.67462158203125, "root_connected_fraction": 0.12830546661923395, 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"common_bone_proxy_source": "cases/PUB-005/auxiliary/bones_complete_labels.nii.gz", "agreement_MONAI_V8": { "kidney_dice": null, "kidney_dice_reason": "Whole-organ kidney and parenchyma target semantics differ.", "artery_dice": 0.17159489769711497, "vein_dice": 0.3863642695940486, "artery_branch_dice": 0.23963073022858133, "vein_branch_dice": 0.43868681835796935 }, "status": "completed", "images": { "front": "cases/PUB-005/comparison/front_comparison.png", "back": "cases/PUB-005/comparison/back_comparison.png" }, "vascular_images": { "front": "cases/PUB-005/comparison/vascular_front_comparison.png", "back": "cases/PUB-005/comparison/vascular_back_comparison.png" }, "native_excretory": { "status": "not_applicable_D_only", "note": "未执行原生排泄期重建；D不能自动视作E。" }, "ct_evidence": { "image": "cases/PUB-005/comparison/ct_contour_evidence.png", "metadata": "cases/PUB-005/comparison/ct_contour_evidence.json" }, "visual_observation": 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